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Ulcerative colitis (chronic) (PheCode 555.21)

ATXN10 · rs182307779

Where this position leads

Condition: Ulcerative Colitis

rs182307779 Condition: Ulcerative Colitis Ulcerative Colitis Condition rs182307779 rs182307779 ATXN10

What the study found

Who was studied 378 African American or Afro-Caribbean cases, 120,945 African American or Afro-Caribbean controls, 1,727 European ancestry cases, 447,323 European ancestry controls, 207 Hispanic or Latin American cases, 59,411 Hispanic or Latin American controls.

The effect Each copy of the A allele shifted the measure 3.21 lower (95% confidence interval 3.18-3.23); p = 6 × 10−13.

How common The A allele had a frequency of about 100% in the people studied.

Where it sits Chromosome 22, band 22q13.31 — in an intron of ATXN10.

What each result means

A/A Two copies of the version the research linked to Ulcerative colitis (chronic) (PheCode 555.21). That is the strongest link of the three results. A link in a study is not a diagnosis.
A/C One copy of the version the research linked to Ulcerative colitis (chronic) (PheCode 555.21). That is a smaller link than two copies.
C/C No copy of the version the research linked to Ulcerative colitis (chronic) (PheCode 555.21). This is the starting point the study compared everyone against.
Source

Questions about rs182307779

What is rs182307779?

rs182307779 is a single position in the genome, in or near the ATXN10 gene. Published research associates it with ulcerative colitis (chronic) (phecode 555.21). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs182307779 linked to?

On MyGeneLog this position is linked to Ulcerative Colitis. The research behind each link, and its sources, are set out on that condition page.

Does having rs182307779 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs182307779 come from?

GWAS Catalog, Science (New York, N.Y.) 2024, PMID:39024449. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Ulcerative colitis (chronic) (PheCode 555.21) (rs182307779). MyGeneLog™. https://www.mygenelog.com/variants/rs182307779

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