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Electrocardiogram morphology (amplitude at temporal datapoints)

ZEB2 · rs17407658

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−8, with 2 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 63,706 European and unknown ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.0308 higher (95% confidence interval 0.02-0.042); p = 2 × 10−8.

How common The A allele had a frequency of about 51% in the people studied.

Where it sits Chromosome 2, band 2q22.3 — in an intron of TEX41.

How common each version is

AG
Korean KRGDB
A 78.9% · G 21.1%
Korean Korea4K
A 79.2% · G 20.8%
Korean Korea1K
A 78.8% · G 21.2%
Japanese ToMMo
A 79.0% · G 21.0%
Vietnamese
A 82.9% · G 17.1%
World gnomAD
A 53.4% · G 46.6%
World 1000 Genomes
A 61.7% · G 38.3%
World TOPMed
A 54.2% · G 45.8%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

A/A Two copies of the version the research linked to Electrocardiogram morphology (amplitude at temporal datapoints). That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to Electrocardiogram morphology (amplitude at temporal datapoints). That is a smaller link than two copies.
G/G No copy of the version the research linked to Electrocardiogram morphology (amplitude at temporal datapoints). This is the starting point the study compared everyone against.
Source

Questions about rs17407658

What is rs17407658?

rs17407658 is a single position in the genome, in or near the ZEB2 gene. Published research associates it with electrocardiogram morphology (amplitude at temporal datapoints). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs17407658 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs17407658 come from?

GWAS Catalog, Cell systems 2020, PMID:32916098. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

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Electrocardiogram morphology (amplitude at temporal datapoints) (rs17407658). MyGeneLog™. https://www.mygenelog.com/variants/rs17407658

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