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Standard

Monocyte count

near IPMK · rs1698403

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−10, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals.

The effect The reported allele is T; the catalogue records no effect size ; p = 2 × 10−10.

How common The T allele had a frequency of about 22% in the people studied.

Where it sits Chromosome 10, band 10q21.1 — between genes, 15.4 kb from IPMK.

How common each version is

AT
Korean KRGDB
A 60.4% · T 39.6%
Korean Korea4K
A 59.2% · T 40.8%
Korean Korea1K
A 59.5% · T 40.5%
Japanese ToMMo
A 61.1% · T 38.9%
Vietnamese
A 53.7% · T 46.3%
World gnomAD
A 66.0% · T 34.0%
World TOPMed
A 64.8% · T 35.2%

By ancestry gnomAD

East Asian
A 55.5% · T 44.5%
European (non-Finnish)
A 78.2% · T 21.8%
African / African American
A 38.9% · T 61.1%
South Asian
A 71.4% · T 28.6%
Admixed American (Latino)
A 76.3% · T 23.7%
Middle Eastern
A 75.0% · T 25.0%
Finnish
A 78.1% · T 21.9%
Ashkenazi Jewish
A 77.5% · T 22.4%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

A/A No copy of the version the research linked to Monocyte count. This is the starting point the study compared everyone against.
A/T One copy of the version the research linked to Monocyte count. That is a smaller link than two copies.
T/T Two copies of the version the research linked to Monocyte count. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Quoting this page

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Monocyte count (rs1698403). MyGeneLog™. https://www.mygenelog.com/variants/rs1698403

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