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High density lipoprotein cholesterol levels

CMIP · rs16955433

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−18, with 3 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.0277 higher (95% confidence interval 0.022-0.034); p = 8 × 10−19.

Where it sits Chromosome 16, band 16q23.2 — in an intron of CMIP.

How common each version is

CT
Korean KRGDB
C 69.4% · T 30.6%
Korean Korea4K
C 68.6% · T 31.4%
Korean Korea1K
C 67.7% · T 32.3%
Japanese ToMMo
C 70.3% · T 29.7%
Vietnamese
C 74.0% · T 26.0%
World gnomAD
C 80.7% · T 19.3%
World 1000 Genomes
C 78.6% · T 21.3%
World TOPMed
C 81.2% · T 18.8%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

C/C No copy of the version the research linked to High density lipoprotein cholesterol levels. This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to High density lipoprotein cholesterol levels. That is a smaller link than two copies.
T/T Two copies of the version the research linked to High density lipoprotein cholesterol levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs16955433

What is rs16955433?

rs16955433 is a single position in the genome, in or near the CMIP gene. Published research associates it with high density lipoprotein cholesterol levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs16955433 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs16955433 come from?

GWAS Catalog, Nature genetics 2021, PMID:33462484. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

High density lipoprotein cholesterol levels (rs16955433). MyGeneLog™. https://www.mygenelog.com/variants/rs16955433

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