Gene Knowledge Graph
UTC
Standard

Familial hemiplegic migraine

ATP1A2 · rs1553244875

Where this position leads

Condition: Migraine

rs1553244875 Condition: Migraine Migraine Condition rs1553244875 rs1553244875 ATP1A2

Strength of the evidence

There is no record yet to score this position by (a ClinVar disease classification or a genome-wide significant study). That is not the same as weak evidence.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What ClinVar records

Classification Conflicting classifications of pathogenicity for Familial hemiplegic migraine; criteria provided, conflicting classifications (1 of 4 stars, 2 submitters), last evaluated 2023-07-27. ClinVar record 529750 NM_000702.4(ATP1A2):c.1028C>T (p.Thr343Ile)

Change history MyGeneLog™ keeps a copy of every weekly release from 2026-10-19 and compares them. This position's classification has not changed since.

What this is ClinVar's aggregate record for this position (as of its 2026-10-19 release), not a result about you. A classification describes the variant against the condition named, as laboratories submitted it. Whether a person carries this variant, and what that would mean for them, is a question for a clinical test and a genetic counsellor.

What each result means

C/C No copy of the version labs disagree about for Familial hemiplegic migraine: in ClinVar, some labs call it disease-causing and others do not. This is the usual result. (ClinVar VCV000529750, criteria provided, conflicting classifications)
C/T One copy of the version labs disagree about for Familial hemiplegic migraine: in ClinVar, some labs call it disease-causing and others do not, so what one copy means is not settled. A genetic counsellor can look at the separate records. (ClinVar VCV000529750, criteria provided, conflicting classifications)
T/T Two copies of the version labs disagree about for Familial hemiplegic migraine: in ClinVar, some labs call it disease-causing and others do not. A result like this should be confirmed by a medical genetic test and talked through with a doctor; consumer DNA files can misread rare variants. (ClinVar VCV000529750, criteria provided, conflicting classifications)

Source: ClinVar VCV000529750, criteria provided, conflicting classifications

Questions about rs1553244875

What is rs1553244875?

rs1553244875 is a single position in the genome, in or near the ATP1A2 gene. Published research associates it with familial hemiplegic migraine. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs1553244875 linked to?

On MyGeneLog this position is linked to Migraine. The research behind each link, and its sources, are set out on that condition page.

Does having rs1553244875 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs1553244875 come from?

ClinVar VCV000529750, criteria provided, conflicting classifications. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Familial hemiplegic migraine (rs1553244875). MyGeneLog™. https://www.mygenelog.com/variants/rs1553244875

← See all variants