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Congenital heart malformation

MAML3 · rs1531070

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−11, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 945 Han Chinese ancestry cases, 1,246 Han Chinese ancestry controls; replicated in 2,160 Han Chinese ancestry cases, 3,866 Han Chinese ancestry controls.

The effect Each copy of the A allele carried 1.40 times the odds of Congenital heart malformation (95% confidence interval 1.27-1.54); p = 5 × 10−12.

How common The A allele had a frequency of about 11% in the people studied.

Where it sits Chromosome 4, band 4q31.1 — in an intron of MAML3.

How common each version is

AG
Korean KRGDB
A 10.4% · G 89.6%
Korean Korea4K
A 9.7% · G 90.3%
Korean Korea1K
A 10.8% · G 89.2%
Japanese ToMMo
A 15.8% · G 84.2%
Vietnamese
A 10.9% · G 89.0%
World gnomAD
A 29.6% · G 70.4%
World 1000 Genomes
A 21.4% · G 78.6%
World TOPMed
A 27.1% · G 73.0%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

A/A Two copies of the version the research linked to Congenital heart malformation. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to Congenital heart malformation. That is a smaller link than two copies.
G/G No copy of the version the research linked to Congenital heart malformation. This is the starting point the study compared everyone against.
Source

Questions about rs1531070

What is rs1531070?

rs1531070 is a single position in the genome, in or near the MAML3 gene. Published research associates it with congenital heart malformation. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs1531070 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs1531070 come from?

GWAS Catalog, Nat Genet 2013, PMID:23708190. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Congenital heart malformation (rs1531070). MyGeneLog™. https://www.mygenelog.com/variants/rs1531070

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