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Gamma glutamyl transferase levels

RORA · rs150952015

Strength of the evidence

2 / 4

Its strongest genetic-study result is p = 10−25, with 3 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals.

The effect Each copy of the T allele shifted the measure 0.0566 lower (95% confidence interval 0.046-0.067); p = 4 × 10−26.

Where it sits Chromosome 15, band 15q22.2 — in an intron of RORA.

How common each version is

GT
World gnomAD
G 96.6% · T 3.4%
World 1000 Genomes
G 98.1% · T 1.9%
World TOPMed
G 96.5% · T 3.5%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. No Korean figure for this position yet.

What each result means

G/G No copy of the version the research linked to Gamma glutamyl transferase levels. This is the starting point the study compared everyone against.
G/T One copy of the version the research linked to Gamma glutamyl transferase levels. That is a smaller link than two copies.
T/T Two copies of the version the research linked to Gamma glutamyl transferase levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs150952015

What is rs150952015?

rs150952015 is a single position in the genome, in or near the RORA gene. Published research associates it with gamma glutamyl transferase levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs150952015 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs150952015 come from?

GWAS Catalog, Nature genetics 2021, PMID:33462484. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Gamma glutamyl transferase levels (rs150952015). MyGeneLog™. https://www.mygenelog.com/variants/rs150952015

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