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Vaginal microbiome MetaCyc pathway (PWY-5180|toluene degradation I (aerobic) (via o-cresol))

near LINC01615 · rs143842290

What the study found

Who was studied 315 Chinese ancestry individuals.

The effect Each copy of the T allele shifted the measure 1.11 higher (95% confidence interval 0.76-1.46); p = 2 × 10−9.

Where it sits Chromosome 6, band 6q27 — between genes, 235.3 kb from LINC01615.

What each result means

C/C No copy of the version the research linked to Vaginal microbiome MetaCyc pathway (PWY-5180|toluene degradation I (aerobic) (via o-cresol)). This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to Vaginal microbiome MetaCyc pathway (PWY-5180|toluene degradation I (aerobic) (via o-cresol)). That is a smaller link than two copies.
T/T Two copies of the version the research linked to Vaginal microbiome MetaCyc pathway (PWY-5180|toluene degradation I (aerobic) (via o-cresol)). That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs143842290

What is rs143842290?

rs143842290 is a single position in the genome, in or near the near LINC01615 gene. Published research associates it with vaginal microbiome metacyc pathway (pwy-5180|toluene degradation i (aerobic) (via o-cresol)). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs143842290 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs143842290 come from?

GWAS Catalog, mSystems 2021, PMID:34282934. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Vaginal microbiome MetaCyc pathway (PWY-5180|toluene degradation I (aerobic) (via o-cresol)) (rs143842290). MyGeneLog™. https://www.mygenelog.com/variants/rs143842290

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