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LCP1 protein levels

near Metazoa_SRP · rs143475523

Where this position leads

Condition: Celiac Disease

rs143475523 Condition: Celiac Disease Celiac Disease Condition rs143475523 rs143475523 near Metazoa…

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.155 higher (95% confidence interval 0.11-0.2); p = 2 × 10−12.

How common The A allele had a frequency of about 2% in the people studied.

Where it sits Chromosome 13, band 13q14.13 — between genes, 6.3 kb from Metazoa_SRP.

What each result means

A/A Two copies of the version the research linked to LCP1 protein levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to LCP1 protein levels. That is a smaller link than two copies.
G/G No copy of the version the research linked to LCP1 protein levels. This is the starting point the study compared everyone against.
Source

Questions about rs143475523

What is rs143475523?

rs143475523 is a single position in the genome, in or near the near Metazoa_SRP gene. Published research associates it with lcp1 protein levels. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs143475523 linked to?

On MyGeneLog this position is linked to Celiac Disease. The research behind each link, and its sources, are set out on that condition page.

Does having rs143475523 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs143475523 come from?

GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

LCP1 protein levels (rs143475523). MyGeneLog™. https://www.mygenelog.com/variants/rs143475523

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