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Standard

High density lipoprotein cholesterol levels

SLC39A8 · rs13135092

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−10, with 63 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

How common each version is

AG
World gnomAD
A 94.9% · G 5.1%
World 1000 Genomes
A 97.5% · G 2.5%
World TOPMed
A 94.4% · G 5.6%

By ancestry gnomAD

East Asian
A 100.0%
European (non-Finnish)
A 91.9% · G 8.1%
African / African American
A 98.6% · G 1.4%
South Asian
A 99.9%
Admixed American (Latino)
A 94.4% · G 5.6%
Middle Eastern
A 93.5% · G 6.5%
Finnish
A 98.8% · G 1.2%
Ashkenazi Jewish
A 84.8% · G 15.2%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races. No Korean figure for this position yet.

What each result means

A/A Two copies of the version the research linked to High density lipoprotein cholesterol levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to High density lipoprotein cholesterol levels. That is a smaller link than two copies.
G/G No copy of the version the research linked to High density lipoprotein cholesterol levels. This is the starting point the study compared everyone against.
Source

Quoting this page

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High density lipoprotein cholesterol levels (rs13135092). MyGeneLog™. https://www.mygenelog.com/variants/rs13135092

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