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Who was studied 394,642 European ancestry individuals.
The effect
Each copy of the A allele shifted the measure 0.0126 higher (95% confidence interval 0.0087-0.0164); p = 1 × 10−11.
How common The A allele had a frequency of about 58% in the people studied.
Where it sits Chromosome 2, band 2q33.2 — in an intron of BMPR2.
What each result means
A/ATwo copies of the version the research linked to Alkaline phosphatase (UKB data field 30610). That is the strongest link of the three results. A link in a study is not a diagnosis.
A/GOne copy of the version the research linked to Alkaline phosphatase (UKB data field 30610). That is a smaller link than two copies.
G/GNo copy of the version the research linked to Alkaline phosphatase (UKB data field 30610). This is the starting point the study compared everyone against.
Nature genetics · 2025 · PMID 39789286 · open access
Questions about rs1199498
What is rs1199498?
rs1199498 is a single position in the genome, in or near the BMPR2 gene. Published research associates it with alkaline phosphatase (ukb data field 30610). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.
What conditions is rs1199498 linked to?
On MyGeneLog this position is linked to Celiac Disease. The research behind each link, and its sources, are set out on that condition page.
Does having rs1199498 mean I will get this?
No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.
Where does the information about rs1199498 come from?
GWAS Catalog, Nature genetics 2025, PMID:39789286. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.
0 11722Reads by AI crawlersClaude0ChatGPT0Google · Gemini0Perplexity0Meta AI0Microsoft · Copilot7Amazon2Apple0China (ByteDance, Huawei, Baidu…)0Others2Total11Counted by the name each crawler declares; requests found to be impersonating one are left out. Google · Gemini includes Googlebot, the search crawler whose index Google also uses for its AI features. Other search engines and bots are under Others.
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Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.
Alkaline phosphatase (UKB data field 30610) (rs1199498). MyGeneLog™. https://www.mygenelog.com/variants/rs1199498