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Standard

Phospholipids in very small VLDL

MTTP · rs11937107

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−14, with 4 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 434,646 British ancestry individuals, 8,796 British Central/South Asian individuals, 6,573 British African individuals.

The effect Each copy of the T allele shifted the measure 0.02 mmol/L lower (95% confidence interval 0.02-0.02); p = 2 × 10−14.

Where it sits Chromosome 4, band 4q23 — in an intron of MTTP.

How common each version is

CT
Korean KRGDB
C 84.9% · T 15.1%
Korean Korea4K
C 86.3% · T 13.7%
Korean Korea1K
C 87.0% · T 13.1%
Japanese ToMMo
C 81.8% · T 18.2%
Vietnamese
C 86.9% · T 13.1%
World gnomAD
C 74.0% · T 26.0%
World 1000 Genomes
C 75.0% · T 25.0%
World TOPMed
C 73.9% · T 26.1%

By ancestry gnomAD

East Asian
C 85.4% · T 14.6%
European (non-Finnish)
C 74.0% · T 26.0%
African / African American
C 72.2% · T 27.8%
South Asian
C 65.3% · T 34.6%
Admixed American (Latino)
C 76.3% · T 23.7%
Middle Eastern
C 66.3% · T 33.7%
Finnish
C 80.9% · T 19.1%
Ashkenazi Jewish
C 60.2% · T 39.8%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

C/C No copy of the version the research linked to Phospholipids in very small VLDL. This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to Phospholipids in very small VLDL. That is a smaller link than two copies.
T/T Two copies of the version the research linked to Phospholipids in very small VLDL. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Quoting this page

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Phospholipids in very small VLDL (rs11937107). MyGeneLog™. https://www.mygenelog.com/variants/rs11937107

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