Standard

Cholesterol, total

FAM117B · rs115400054

Where this position leads

Condition: Cholesterol (LDL, HDL and Total)

What the study found

Who was studied up to 62,166 European ancestry individuals.

The effect Each copy of the C allele shifted the measure 0.054 s.d. higher (95% confidence interval 0.036-0.072); p = 5 × 10⁻⁹.

How common The C allele had a frequency of about 88% in the people studied.

Where it sits Chromosome 2, band 2q33.2 — in an intron of ICA1L.

What each result means

C/C Two copies of the version the research linked to Cholesterol, total. That is the strongest link of the three results. A link in a study is not a diagnosis.

C/T One copy of the version the research linked to Cholesterol, total. That is a smaller link than two copies.

T/T No copy of the version the research linked to Cholesterol, total. This is the starting point the study compared everyone against.

Source

The impact of low-frequency and rare variants on lipid levels

Surakka I, Horikoshi M, Mägi R, Sarin AP, Mahajan A, Lagou V, Marullo L, Ferreira T, Miraglio B, Timonen S, Kettunen J, Pirinen M

and 74 more — show all

Karjalainen J, Thorleifsson G, Hägg S, Hottenga JJ, Isaacs A, Ladenvall C, Beekman M, Esko T, Ried JS, Nelson CP, Willenborg C, Gustafsson S, Westra HJ, Blades M, de Craen AJ, de Geus EJ, Deelen J, Grallert H, Hamsten A, Havulinna AS, Hengstenberg C, Houwing-Duistermaat JJ, Hyppönen E, Karssen LC, Lehtimäki T, Lyssenko V, Magnusson PK, Mihailov E, Müller-Nurasyid M, Mpindi JP, Pedersen NL, Penninx BW, Perola M, Pers TH, Peters A, Rung J, Smit JH, Steinthorsdottir V, Tobin MD, Tsernikova N, van Leeuwen EM, Viikari JS, Willems SM, Willemsen G, Schunkert H, Erdmann J, Samani NJ, Kaprio J, Lind L, Gieger C, Metspalu A, Slagboom PE, Groop L, van Duijn CM, Eriksson JG, Jula A, Salomaa V, Boomsma DI, Power C, Raitakari OT, Ingelsson E, Järvelin MR, Thorsteinsdottir U, Franke L, Ikonen E, Kallioniemi O, Pietiäinen V, Lindgren CM, Stefansson K, Palotie A, McCarthy MI, Morris AP, Prokopenko I, Ripatti S

ENGAGE Consortium

Nature genetics · 2015 · PMID 25961943

Questions about rs115400054

What is rs115400054?

rs115400054 is a single position in the genome, in or near the FAM117B gene. Published research associates it with cholesterol, total. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs115400054 linked to?

On MyGeneLog this position is linked to Cholesterol (LDL, HDL and Total). The research behind each link, and its sources, are set out on that condition page.

Does having rs115400054 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs115400054 come from?

GWAS Catalog, Nat Genet 2015, PMID:25961943. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Cholesterol, total (rs115400054). MyGeneLog™. https://www.mygenelog.com/variants/rs115400054

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