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Kidney stones

ALPL · rs10917002

Where this position leads

Condition: Kidney Stones

rs10917002 Condition: Kidney Stones Kidney Stones Condition rs10917002 rs10917002 ALPL

What the study found

Who was studied 6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls.

The effect Each copy of the T allele carried 1.13 times the odds of Kidney stones (95% confidence interval 1.09-1.17); p = 3 × 10−11.

How common The T allele had a frequency of about 11% in the people studied.

Where it sits Chromosome 1, band 1p36.12 — in an intron of ALPL.

What each result means

C/C No copy of the version the research linked to Kidney stones. This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to Kidney stones. That is a smaller link than two copies.
T/T Two copies of the version the research linked to Kidney stones. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Questions about rs10917002

What is rs10917002?

rs10917002 is a single position in the genome, in or near the ALPL gene. Published research associates it with kidney stones. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs10917002 linked to?

On MyGeneLog this position is linked to Kidney Stones. The research behind each link, and its sources, are set out on that condition page.

Does having rs10917002 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs10917002 come from?

GWAS Catalog, Nature communications 2019, PMID:31729369. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Kidney stones (rs10917002). MyGeneLog™. https://www.mygenelog.com/variants/rs10917002

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