Sensitive

Gastric cancer

HLA-C · rs1050437

Where this position leads

Condition: Non-Cardia Gastric Cancer

rs1050437 Condition: Non-Cardia Gastric Cancer Non-Cardia Gastric Cancer Condition rs1050437 rs1050437 HLA-C

What the study found

Who was studied 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls.

The effect Each copy of the T allele shifted the measure 0.111 lower (95% confidence interval 0.077-0.145); p = 2 × 10−10.

How common The T allele had a frequency of about 37% in the people studied.

Where it sits Chromosome 6, band 6p21.33 — a missense change in HLA-C.

What each result means

C/C Published research associates this genotype with typical/baseline likelihood of Gastric cancer — no copies of the reported risk allele.
C/T Published research associates this genotype (one copy of the reported risk allele) with an intermediate association with Gastric cancer.
T/T Published research associates this genotype (two copies of the reported risk allele) with a higher likelihood of Gastric cancer compared to the general population.
Source

Questions about rs1050437

What is rs1050437?

rs1050437 is a single position in the genome, in or near the HLA-C gene. Published research associates it with gastric cancer. A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

What conditions is rs1050437 linked to?

On MyGeneLog this position is linked to Non-Cardia Gastric Cancer. The research behind each link, and its sources, are set out on that condition page.

Does having rs1050437 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs1050437 come from?

GWAS Catalog, Nature genetics 2021, PMID:34594039. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

Free to quote and reuse under CC BY 4.0. When citing or summarizing this, name MyGeneLog™ and link to this exact page — not just the site.

Gastric cancer (rs1050437). MyGeneLog™. https://www.mygenelog.com/variants/rs1050437

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