Sensitive

Squamous cell carcinoma (MTAG)

MARK3 · rs10141120

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−7, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 7,402 European ancestry cases, 286,892 European ancestry controls; replicated in 134,700 European ancestry cases, 2,394,699 European ancestry controls.

The effect The reported allele is C; the catalogue records no effect size ; p = 4 × 10−8.

Where it sits Chromosome 14, band 14q32.32 — in an intron of MARK3.

What each result means

C/C Two copies of the version the research linked to Squamous cell carcinoma (MTAG). That is the strongest link of the three results. A link in a study is not a diagnosis.
C/T One copy of the version the research linked to Squamous cell carcinoma (MTAG). That is a smaller link than two copies.
T/T No copy of the version the research linked to Squamous cell carcinoma (MTAG). This is the starting point the study compared everyone against.
Source

Questions about rs10141120

What is rs10141120?

rs10141120 is a single position in the genome, in or near the MARK3 gene. Published research associates it with squamous cell carcinoma (mtag). A single variant does not decide an outcome — it shifts a probability, and for most common variants the shift is small.

Does having rs10141120 mean I will get this?

No. Common variants like this one move a probability slightly and, on their own, rarely decide anything about one person. Nothing on this page is a diagnosis, and health decisions should be made with a clinician who can see your whole picture.

Where does the information about rs10141120 come from?

GWAS Catalog, Nature communications 2022, PMID:36496446. Every variant on MyGeneLog comes from public primary sources and is published with its citation and the date it was checked.

Quoting this page

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Squamous cell carcinoma (MTAG) (rs10141120). MyGeneLog™. https://www.mygenelog.com/variants/rs10141120

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