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Thyroxine levels

ITPK1 · rs768356

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−13, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 191,449 European ancestry individuals.

The effect Each copy of the C allele shifted the measure 0.03 lower (95% confidence interval 0.022-0.038); p = 1 × 10−13.

How common The C allele had a frequency of about 19% in the people studied.

Where it sits Chromosome 14, band 14q32.12 — in an intron of ITPK1.

How common each version is

CT
Korean KRGDB
C 11.1% · T 88.9%
Korean Korea4K
C 9.5% · T 90.5%
Japanese ToMMo
C 9.6% · T 90.4%
Vietnamese
C 18.9% · T 81.1%
World gnomAD
C 23.3% · T 76.7%
World 1000 Genomes
C 24.0% · T 76.0%
World TOPMed
C 23.2% · T 76.8%

By ancestry gnomAD

East Asian
C 14.3% · T 85.7%
European (non-Finnish)
C 20.2% · T 79.8%
African / African American
C 31.8% · T 68.2%
South Asian
C 27.8% · T 72.2%
Admixed American (Latino)
C 17.6% · T 82.4%
Middle Eastern
C 27.2% · T 72.8%
Finnish
C 19.6% · T 80.4%
Ashkenazi Jewish
C 26.9% · T 73.1%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

C/C Two copies of the version the research linked to Thyroxine levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
C/T One copy of the version the research linked to Thyroxine levels. That is a smaller link than two copies.
T/T No copy of the version the research linked to Thyroxine levels. This is the starting point the study compared everyone against.
Source

Quoting this page

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Thyroxine levels (rs768356). MyGeneLog™. https://www.mygenelog.com/variants/rs768356

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