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Sensitive

Plasma X-12410 levels in chronic kidney disease

near NAT2 · rs4921915

Stands on its own. Nothing else here links to this position yet — but the page above is the point: what the research found, what each genotype means, and where it came from, in language you can read. Links to conditions, drugs and the senses appear automatically if we write them.

Strength of the evidence

3 / 4

Its strongest genetic-study result is p = 10−54, with 49 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 4,285 European ancestry individuals.

The effect Each copy of the A allele shifted the measure 0.246 lower (95% confidence interval 0.2-0.29); p = 1 × 10−24.

How common The A allele had a frequency of about 76% in the people studied.

Where it sits Chromosome 8, band 8p22 — between genes, 13.7 kb from NAT2.

How common each version is

AG
Korean KRGDB
A 35.1% · G 64.8%
Korean Korea4K
A 35.1% · G 64.9%
Korean Korea1K
A 36.6% · G 63.4%
Japanese ToMMo
A 30.6% · G 69.3%
Vietnamese
A 55.1% · G 44.9%
World gnomAD
A 70.8% · G 29.2%
World 1000 Genomes
A 64.6% · G 35.4%
World TOPMed
A 69.4% · G 30.6%

By ancestry gnomAD

East Asian
A 46.0% · G 54.0%
European (non-Finnish)
A 77.4% · G 22.6%
African / African American
A 62.1% · G 37.9%
South Asian
A 77.4% · G 22.6%
Admixed American (Latino)
A 66.2% · G 33.8%
Middle Eastern
A 79.2% · G 20.8%
Finnish
A 74.6% · G 25.4%
Ashkenazi Jewish
A 83.2% · G 16.8%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

A/A Two copies of the version the research linked to Plasma X-12410 levels in chronic kidney disease. That is the strongest link of the three results. A link in a study is not a diagnosis.
A/G One copy of the version the research linked to Plasma X-12410 levels in chronic kidney disease. That is a smaller link than two copies.
G/G No copy of the version the research linked to Plasma X-12410 levels in chronic kidney disease. This is the starting point the study compared everyone against.
Source
Genetic studies of paired metabolomes reveal enzymatic and transport processes at the interface of plasma and urine
Schlosser P, Scherer N, Grundner-Culemann F, Monteiro-Martins S, Haug S, Steinbrenner I, Uluvar B, Wuttke M, Cheng Y, Ekici AB, Gyimesi G, Karoly ED
and 20 more — show all
Kotsis F, Mielke J, Gomez MF, Yu B, Grams ME, Coresh J, Boerwinkle E, Köttgen M, Kronenberg F, Meiselbach H, Mohney RP, Akilesh S, Schmidts M, Hediger MA, Schultheiss UT, Eckardt KU, Oefner PJ, Sekula P, Li Y, Köttgen A
GCKD Investigators
Nature genetics · 2023 · PMID 37277652 · open access

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

Plasma X-12410 levels in chronic kidney disease (rs4921915). MyGeneLog™. https://www.mygenelog.com/variants/rs4921915

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