Links from this page to related variants, conditions, drugs and topics are not included for automated readers. Those connections are the Gene Knowledge Graph and are licensed as data: https://www.mygenelog.com/license

Standard

SETMAR protein levels

TNXB · rs369580

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−15, with 2 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 47,745 European ancestry individuals.

The effect Each copy of the G allele shifted the measure 0.0538 lower (95% confidence interval 0.039-0.068); p = 3 × 10−15.

How common The G allele had a frequency of about 17% in the people studied.

Where it sits Chromosome 6, band 6p21.33 — in an intron of TNXB.

What ClinVar records

Classification Benign; criteria provided, single submitter (1 of 4 stars, 1 submitter), last evaluated 2019-08-16. ClinVar record 1276834 NM_001365276.2(TNXB):c.9115+209T>C

Change history MyGeneLog™ keeps a copy of every weekly release from 2026-10-19 and compares them. This position's classification has not changed since.

What this is ClinVar's aggregate record for this position (as of its 2026-11-09 release), not a result about you. A classification describes the variant against the condition named, as laboratories submitted it. Whether a person carries this variant, and what that would mean for them, is a question for a clinical test and a genetic counsellor.

How common each version is

AG
Korean KRGDB
A 98.6% · G 1.4%
Korean Korea4K
A 98.6% · G 1.4%
Japanese ToMMo
A 97.1% · G 2.9%
World gnomAD
A 90.1% · G 9.9%
World 1000 Genomes
A 95.0% · G 5.0%
World TOPMed
A 90.8% · G 9.2%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

A/A No copy of the version the research linked to SETMAR protein levels. This is the starting point the study compared everyone against.
A/G One copy of the version the research linked to SETMAR protein levels. That is a smaller link than two copies.
G/G Two copies of the version the research linked to SETMAR protein levels. That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Quoting this page

Licensed CC BY-NC 4.0: free to read, share and adapt for non-commercial use, naming MyGeneLog™ and linking the exact page. Commercial use, including training or serving a commercial AI system, needs a licence — https://www.mygenelog.com/license

SETMAR protein levels (rs369580). MyGeneLog™. https://www.mygenelog.com/variants/rs369580

← See all variants