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Standard

Clonal hematopoiesis (ASXL1 mutation)

CSGALNACT1 · rs2958593

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−8, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 132,546 Hispanic or Latin American individuals.

The effect Each copy of the T allele carried 1.63 times the odds of Clonal hematopoiesis (ASXL1 mutation) (95% confidence interval 1.39-1.92); p = 2 × 10−8.

Where it sits Chromosome 8, band 8p21.3 — in an intron of CSGALNACT1.

How common each version is

CT
Korean KRGDB
C 85.6% · T 14.4%
Korean Korea4K
C 85.1% · T 14.9%
Korean Korea1K
C 85.3% · T 14.7%
Japanese ToMMo
C 85.5% · T 14.5%
Vietnamese
C 88.0% · T 12.0%
World gnomAD
C 78.5% · T 21.5%
World 1000 Genomes
C 78.7% · T 21.3%
World TOPMed
C 78.3% · T 21.7%

By ancestry gnomAD

East Asian
C 85.4% · T 14.6%
European (non-Finnish)
C 83.2% · T 16.8%
African / African American
C 68.0% · T 32.0%
South Asian
C 83.3% · T 16.7%
Admixed American (Latino)
C 81.7% · T 18.3%
Middle Eastern
C 73.5% · T 26.5%
Finnish
C 79.6% · T 20.4%
Ashkenazi Jewish
C 77.1% · T 22.9%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study. The ancestry rows are gnomAD's own groups (via Ensembl), as the survey defines them, not races.

What each result means

C/C No copy of the version the research linked to Clonal hematopoiesis (ASXL1 mutation). This is the starting point the study compared everyone against.
C/T One copy of the version the research linked to Clonal hematopoiesis (ASXL1 mutation). That is a smaller link than two copies.
T/T Two copies of the version the research linked to Clonal hematopoiesis (ASXL1 mutation). That is the strongest link of the three results. A link in a study is not a diagnosis.
Source

Quoting this page

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Clonal hematopoiesis (ASXL1 mutation) (rs2958593). MyGeneLog™. https://www.mygenelog.com/variants/rs2958593

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