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Sensitive

Inborn genetic diseases

PNPT1 · rs2627765

Strength of the evidence

There is no record yet to score this position by (a ClinVar disease classification or a genome-wide significant study). That is not the same as weak evidence.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What ClinVar records

Classification Benign for Combined oxidative phosphorylation defect type 13, Autosomal recessive nonsyndromic hearing loss 70, Germ cell tumor of testis; criteria provided, multiple submitters, no conflicts (2 of 4 stars, 7 submitters), last evaluated 2026-02-04. ClinVar record 138737 NM_033109.5(PNPT1):c.1390C>A (p.Arg464=)

Classification Pathogenic for Inborn genetic diseases; criteria provided, multiple submitters, no conflicts (2 of 4 stars, 2 submitters), last evaluated 2024-05-05. ClinVar record 985545 NM_033109.5(PNPT1):c.1390C>T (p.Arg464Ter)

Change history MyGeneLog™ keeps a copy of every weekly release from 2026-10-19 and compares them. This position's classification has not changed since.

What this is ClinVar's aggregate record for this position (as of its 2026-11-09 release), not a result about you. A classification describes the variant against the condition named, as laboratories submitted it. Whether a person carries this variant, and what that would mean for them, is a question for a clinical test and a genetic counsellor.

How common each version is

GT
Korean KRGDB
G 81.7% · T 18.3%
Korean Korea4K
G 83.0% · T 17.0%
Korean Korea1K
G 82.6% · T 17.4%
Japanese ToMMo
G 82.2% · T 17.8%
Vietnamese
G 85.2% · T 14.8%
World gnomAD
G 51.7% · T 48.3%
World 1000 Genomes
G 64.3% · T 35.7%
World TOPMed
G 53.3% · T 46.7%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

A/A Two copies of the version ClinVar lists as disease-causing for Inborn genetic diseases. A result like this should be confirmed by a medical genetic test and talked through with a doctor; consumer DNA files can misread rare variants. (ClinVar VCV000985545, criteria provided, multiple submitters, no conflicts)
A/G One copy of the version ClinVar lists as disease-causing for Inborn genetic diseases. Some conditions need only one copy; for others, one copy makes a person a carrier who is usually healthy but can pass it on. A genetic counsellor can say which applies. (ClinVar VCV000985545, criteria provided, multiple submitters, no conflicts)
G/G No copy of the version ClinVar lists as disease-causing for Inborn genetic diseases. This is the usual result. (ClinVar VCV000985545, criteria provided, multiple submitters, no conflicts)

Source: ClinVar VCV000985545, criteria provided, multiple submitters, no conflicts

Quoting this page

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Inborn genetic diseases (rs2627765). MyGeneLog™. https://www.mygenelog.com/variants/rs2627765

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