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Standard

Smoking initiation

GLIS3 · rs10465028

Strength of the evidence

1 / 4

Its strongest genetic-study result is p = 10−13, with 1 associations in the GWAS Catalog.

How this is scored

4: ClinVar disease-causing, reviewed by an expert panel or a guideline (3–4 stars). 3: ClinVar, several labs agreeing (2 stars), or a genetic study at p ≤ 10−50. 2: ClinVar from one lab (1 star), or p ≤ 10−20. 1: ClinVar submitted without criteria (0 stars), or genome-wide significance (p ≤ 5×10−8). The higher of the two counts. It says how solid the evidence is, not whether it matters for a particular person.

What the study found

Who was studied 3,382,012 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals.

The effect Each copy of the G allele shifted the measure 0.0106 lower (95% confidence interval 0.0078-0.0134); p = 5 × 10−14.

How common The G allele had a frequency of about 8% in the people studied.

Where it sits Chromosome 9, band 9p24.2 — in an intron of GLIS3.

How common each version is

GT
Korean KRGDB
G 20.9% · T 79.1%
Korean Korea4K
G 21.3% · T 78.7%
Korean Korea1K
G 20.5% · T 79.5%
Japanese ToMMo
G 27.2% · T 72.8%
Vietnamese
G 25.9% · T 74.1%
World gnomAD
G 7.8% · T 92.2%
World 1000 Genomes
G 11.0% · T 89.0%
World TOPMed
G 7.6% · T 92.4%

The share of all copies of this position that are each version. Source: the population studies published in dbSNP (US NCBI); each row names its study.

What each result means

G/G Two copies of the version the research linked to Smoking initiation. That is the strongest link of the three results. A link in a study is not a diagnosis.
G/T One copy of the version the research linked to Smoking initiation. That is a smaller link than two copies.
T/T No copy of the version the research linked to Smoking initiation. This is the starting point the study compared everyone against.
Source

Quoting this page

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Smoking initiation (rs10465028). MyGeneLog™. https://www.mygenelog.com/variants/rs10465028

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